Here is a list of all class members with links to the classes they belong to:

- u -

uf : vg::ContractingGraph
uf_handle() : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
uf_rank() : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
unaligned_bands : vg::AlignmentChainModel
unaltered_motif_data : vg::SpliceStats
unary_boundaries : vg::NetGraph
unbacked() : vg::GBWTHandler
uncanonicalizable_sv_warned : vg::Constructor
underflow() : vg::zstd_decompress_buf
underlying_interval() : vg::IncrementalSubgraph, vg::JoinedSpliceGraph
Undetermined : vg::MultipathMapper
unescape_delim() : vg::Packer
unescape_delims() : vg::Packer
unexpected_chain_children : vg::GrefCover::TopLevelSnarlStats
unfold() : vg::PhaseUnfolder, vg::VG
unfold_component() : vg::PhaseUnfolder
unfold_max_length : vg::Genotyper
uniform_int_distribution() : vg::uniform_int_distribution< T >
uniform_real_distribution() : vg::uniform_real_distribution< T >
unimplemented_error() : vg::ZipCodeTree::distance_iterator
unindex_edge_by_node_sides() : vg::VG
union_find : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
union_groups() : vg::SparseUnionFind
union_size : vg::IntervalUnion
unique_minimizers() : vg::HaplotypePartitioner
universe_size : vg::SmallBitset
unlocalized_insertion() : vg::WFAAlignment
unlock() : vg::GraphSynchronizer::Lock
unmapped : vg::Counts
unoriented_distance_between() : vg::MinimizerMapper
unoriented_motif() : vg::SpliceStats
unpack_chain_code() : vg::ZipCode
unpack_node_code() : vg::ZipCode
unpack_snarl_code() : vg::ZipCode
unpaired : vg::MinimizerMapper
unpaired_penalty : vg::BaseMapper
unparse() : vg::OptionValueParser< Value >, vg::OptionValueParser< vector< Item > >
unrecord() : vg::SnarlManager
unreverse_graph() : vg::GSSWAligner
unreverse_graph_mapping() : vg::GSSWAligner
unset() : vg::algorithms::TracedScore
unset_pggname : GBWTConfig
unstranded : vg::OrientedDistanceClusterer
untangle_allele_traversals : vg::Deconstructor
update() : vg::WFANode
update_diagonal_range() : vg::WFATree
update_end_paths() : vg::algorithms::Anchor
update_haplotype_index() : vg::Transcriptome
update_in_out_edges() : vg::FlowSort
update_inner_values() : haplo::haplo_DP_column
update_intron_length_distribution() : vg::SpliceStats
update_mapping_positions() : vg::PathIndex
update_min_max_product_size() : vg::PrimerFinder
update_motifs() : vg::SpliceStats
update_nesting_info_tags() : vg::VCFOutputCaller
update_path_indexes() : vg::GraphSynchronizer
update_paths() : vg::algorithms::Anchor
update_progress() : vg::Progressive
update_score_vector() : haplo::haplo_DP_column
update_scoring() : vg::SpliceStats
update_start_paths() : vg::algorithms::Anchor
update_state() : vg::BandedGlobalAligner< IntType >::BABuilder, vg::DinucleotideMachine
update_tag_string_for_SA() : vg::Surjector
update_transcript_paths() : vg::Transcriptome
update_variation() : vg::PrimerFinder
update_vcf_header() : vg::PoissonSupportSnarlCaller, vg::RatioSupportSnarlCaller, vg::SnarlCaller
update_vcf_info() : vg::MCMCCaller, vg::PoissonSupportSnarlCaller, vg::RatioSupportSnarlCaller, vg::SnarlCaller, vg::SupportBasedSnarlCaller
upper_bound_heuristic : vg::TargetValueSearch
USABLE_BITS : vg::varint_vector_t
use() : GraphHandler, vg::GBWTHandler
use_approx_sub_mem_count : vg::BaseMapper
use_avg_length : vg::NGSSimulator
use_bounded_syncmers : vg::IndexingParameters
use_cluster_mq : vg::Mapper
use_compressed() : vg::GBWTHandler
use_dynamic() : vg::GBWTHandler
use_explored_cap : vg::MinimizerMapper
use_external() : vg::GBWTHandler
use_fanout_match_alg : vg::MultipathMapper
use_greedy_mem_restarts : vg::BaseMapper
use_internal_connectivity : vg::NetGraph
use_mapq : vg::Genotyper, vg::PoissonSupportSnarlCaller
use_min_dist_clusterer : vg::MultipathMapper
use_payload_paths : vg::MinimizerMapper
use_pessimistic_tail_alignment : vg::MultipathMapper
use_population_mapqs : vg::MultipathMapper
use_saved_traversal() : vg::ZipCodeTree::distance_iterator
use_stripped_match_alg : vg::MultipathMapper
use_syncmers : vg::MinimizerIndexParameters
use_tvs_clusterer : vg::MultipathMapper
use_weighted_minimizers : vg::MinimizerIndexParameters
used_bins_of_range() : vg::StreamIndexBase
uses_syncmers : vg::MinimizerMapper