k-mer counting job functor class using bm::aggregator<> More...

Public Types
typedef DNA_Scan::bvector_type	bvector_type
typedef bvector_type::size_type	size_type

Public Member Functions
	Counting_JobFunctor (const DNA_Scan &parent_scanner, const bvector_type &bv_kmers, size_type from, size_type to, rsc_sparse_vector_u32 &kmer_counts)
	constructor
	Counting_JobFunctor (const Counting_JobFunctor &func)
	copy-ctor
void	operator() ()
	Main logic (functor).

Detailed Description

template<typename DNA_Scan>
class Counting_JobFunctor< DNA_Scan >

k-mer counting job functor class using bm::aggregator<>

Functor received its range of k-mers in the presence-absense bit-vector then follows it to run the search-counting algorithm using DNA fingerprints common for all job functors.

bm::aggregator<> cannot be shared across threads, so functor creates its own

Examples: xsample07.cpp.

Definition at line 695 of file xsample07.cpp.

Member Typedef Documentation

◆ bvector_type

template<typename DNA_Scan>

typedef DNA_Scan::bvector_type Counting_JobFunctor< DNA_Scan >::bvector_type

Examples: xsample07.cpp.

Definition at line 698 of file xsample07.cpp.

◆ size_type

template<typename DNA_Scan>

typedef bvector_type::size_type Counting_JobFunctor< DNA_Scan >::size_type

Examples: xsample07.cpp.

Definition at line 699 of file xsample07.cpp.

Constructor & Destructor Documentation

◆ Counting_JobFunctor() [1/2]

template<typename DNA_Scan>

Counting_JobFunctor< DNA_Scan >::Counting_JobFunctor	(	const DNA_Scan &	parent_scanner,
		const bvector_type &	bv_kmers,
		size_type	from,
		size_type	to,
		rsc_sparse_vector_u32 &	kmer_counts )